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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs13393800 1 rs13393800 chr2:233442091 EIF4E2 chr2:233415357-233448349:+ -0.19 -4.31 1.78E-5 Height
BRCA cis rs13393800 1 rs13393800 chr2:233442091 TIGD1 chr2:233412779-233415226:- -0.15 -3.73 0.000202 Height
BRCA cis rs17401966 1 rs1339458 chr1:10328338 PGD chr1:10459085-10480200:+ 0.2 5.6 2.7E-8 Hepatocellular carcinoma
BRCA cis rs4665058 1 rs13395766 chr2:160114186 WDSUB1 chr2:160092305-160143236:- 0.32 3.96 8.15E-5 Sudden cardiac arrest
BRCA cis rs6715284 1 rs13398075 chr2:202376269 PPIL3 chr2:201735680-201753999:- 0.48 8.18 8.0E-16 Rheumatoid arthritis
BRCA cis rs9309473 1 rs13398956 chr2:73720258 ALMS1P chr2:73872046-73912692:+ 0.26 6.6 6.35E-11 Metabolite levels
BRCA cis rs934299 1 rs13401391 chr2:137340034 THSD7B chr2:137523115-138435287:+ 0.13 3.42 0.00066 Cognitive test performance
BRCA cis rs11884476 1 rs13403995 chr2:206334657 NRP2 chr2:206547224-206662856:+ 0.14 3.63 0.000291 AIDS progression
BRCA cis rs6724465 1 rs13404123 chr2:219916797 GLB1L chr2:220101505-220110131:- 0.21 3.79 0.000157 Height
BRCA cis rs4665058 1 rs13407368 chr2:160105007 WDSUB1 chr2:160092305-160143236:- 0.33 4.06 5.24E-5 Sudden cardiac arrest
BRCA cis rs6715284 1 rs13408294 chr2:202171573 PPIL3 chr2:201735680-201753999:- -0.45 -8.74 8.57E-18 Rheumatoid arthritis
BRCA cis rs2041840 1 rs13409250 chr2:37463642 CEBPZ chr2:37428778-37458740:- -0.19 -6.04 2.11E-9 Chronic lymphocytic leukemia
BRCA cis rs4665058 1 rs13409911 chr2:160083068 WDSUB1 chr2:160092305-160143236:- 0.3 3.78 0.000165 Sudden cardiac arrest
BRCA cis rs11884476 1 rs13410658 chr2:206342082 NRP2 chr2:206547224-206662856:+ -0.14 -3.73 0.000199 AIDS progression
BRCA cis rs4665058 1 rs13413691 chr2:160084236 WDSUB1 chr2:160092305-160143236:- 0.31 3.82 0.000142 Sudden cardiac arrest